R:更改配色方案时ggplot2图例消失

Question

灵感来自this发布后，我尝试使用罗宾逊投影绘制世界地图并向 map 添加彩色点。 重新投影 map 和点效果很好，但是，由于某种我不明白的原因，我无法更改点的配色方案并保留图例。我尝试过以下方法:

首先我在这里得到形状文件:land和 graticules

library(rgdal)
library(ggplot2)
library(sp)
library(yarrr)

setwd('~/Documents/worldshapefiles') # this is where the shapefiles are

# read the shapefile for the simple worldmap
wmap <- readOGR(dsn = 'ne_110m_land', layer = 'ne_110m_land')
wmap_df <- fortify(wmap)

# get bounding box
bbox <- readOGR("ne_110m_graticules_all", layer="ne_110m_wgs84_bounding_box") # read bounding box
bbox_df<- fortify(bbox)

site_locs <- cbind.data.frame(x = c(-5, -3, -3, 58, -112), y = c(68, -37, 35, 19, -4), ocean = c('NAT', 'IND', 'MDX', 'SAT', 'PAC'))

coordinates(site_locs) <- c("x", "y") # convert to spatialpointsdataframe
proj4string(site_locs) <- CRS("+proj=longlat + datum=WGS84")

# reproject everything
bbox_robin <- spTransform(bbox, CRS("+proj=robin"))
bbox_robin_df <- fortify(bbox_robin)
wmap_robin <- spTransform(wmap, CRS("+proj=robin"))
wmap_df_robin <- fortify(wmap_robin)
site_locs_robin <- spTransform(site_locs, CRS('+proj=robin'))
site_locs_robin_df <- as.data.frame(site_locs_robin)

col_pal <- piratepal('espresso', length.out = 5)

# plot
ggplot(bbox_robin_df, aes(long,lat)) + 
  geom_polygon(data = wmap_df_robin, aes(long,lat, group = group, fill = hole)) + 
  geom_point(data = site_locs_robin_df, aes(x, y, colour = ocean)) +
  coord_equal() +
  geom_polygon(linetype = 'solid', fill = NA, colour = 'black', size = 0.5) +
  scale_fill_manual(values=c("black", "white"), guide="none")

这工作正常并产生下面的图像:

但是，当我尝试更改色阶时:

ggplot(bbox_robin_df, aes(long,lat)) + 
  geom_polygon(data = wmap_df_robin, aes(long,lat, group = group, fill = hole)) + 
  geom_point(data = site_locs_robin_df, aes(x, y, colour = ocean)) +
  scale_colour_manual(values = col_pal) +
  coord_equal() +
  geom_polygon(linetype = 'solid', fill = NA, colour = 'black', size = 0.5) +
  scale_fill_manual(values=c("grey80", "white"), guide="none")

我收到以下警告已删除包含缺失值 (geom_point) 的 5 行。 和一个空图。

当我像这样改变色阶时:

ggplot(bbox_robin_df, aes(long,lat)) + 
  geom_polygon(data = wmap_df_robin, aes(long,lat, group = group, fill = hole)) + 
  geom_point(data = site_locs_robin_df, aes(x, y, colour = ocean), colour = col_pal) +
  scale_colour_manual(values = col_pal) +
  coord_equal() +
  geom_polygon(linetype = 'solid', fill = NA, colour = 'black', size = 0.5) +
  scale_fill_manual(values=c("grey80", "white"), guide="none")

颜色结果很好(如 col_pal 中指定)，但我丢失了图例。

有什么想法可以解决这个问题吗？或者其他方法？

实际上，我还有更多点，其中一些点重叠，我想修复它们的绘制顺序(例如 SAT 位于 IND 之上)。我该怎么做？

Answer 1

问题在于 piratepal() 返回一个命名的颜色向量，而 scale_color_manual() 将名称解释为比例中断:

> piratepal('espresso', length.out = 5)
       blue      yellow         red       green      orange 
"#2366C0FF" "#E9D738FF" "#B91226FF" "#A3DA4BFF" "#FF6435FF" 

由于您的数据中不存在这些中断，因此这些点将被删除。

解决方案是取消颜色的命名:

col_pal <- unname(piratepal('espresso', length.out = 5))

ggplot(bbox_robin_df, aes(long,lat)) + 
  geom_polygon(data = wmap_df_robin, aes(long,lat, group = group, fill = hole)) + 
  geom_point(data = site_locs_robin_df, aes(x, y, colour = ocean)) +
  scale_colour_manual(values = col_pal) +
  coord_equal() +
  geom_polygon(linetype = 'solid', fill = NA, colour = 'black', size = 0.5) +
  scale_fill_manual(values=c("grey80", "white"), guide="none")