我已经写了一个Dockerfile
来构建一个docker镜像:
#author russell jarvis rjjarvis@asu.edu
#start from the serial version of ubuntu NEURON+Python as if its a module
# add mpi support
#NEURON Dockerfile
#Docker comments must be of this form.
# This is the syntax for a directive. Don’t get confused
#Set the base image to pyneuron-toolbox
FROM russelljarvis/pyneuron-toolbox
RUN echo $PATH
WORKDIR $HOME
RUN sudo /opt/conda/bin/conda install -y mpi4py ipython
RUN echo $PATH
WORKDIR /home/docker
RUN \
sudo wget https://www.open-mpi.org/software/ompi/v2.0/downloads/openmpi-2.0.0.tar.gz && \
sudo tar -xzf openmpi-2.0.0.tar.gz && \
sudo rm openmpi-2.0.0.tar.gz
RUN echo $PATH
WORKDIR /home/docker/openmpi-2.0.0
RUN \
sudo ./configure && \
sudo make all && \
sudo make install
RUN echo $PATH
#Download maven, and its java dependencies
WORKDIR $HOME/git
RUN sudo apt-get -y install default-jre default-jdk maven
RUN echo $PATH
WORKDIR /home/docker/neuron/nrn-7.4
RUN sudo ./configure --prefix=`pwd` --without-iv --with-nrnpython=/opt/conda/bin/python --with-paranrn=/usr/bin/mpiexec
RUN sudo make all && \
sudo make install
RUN echo $PATH
WORKDIR src/nrnpython
RUN sudo /opt/conda/bin/python3.4 setup.py install
RUN echo $PATH
RUN echo "its chowning the USER directory that seems to break path"
#RUN sudo chown -R docker $HOME
RUN echo $PATH
WORKDIR /home/docker/git
#RUN git clone https://github.com/NeuroML/jNeuroML
RUN git clone https://github.com/russelljjarvis/jNeuroML.git
WORKDIR jNeuroML
RUN sudo /opt/conda/bin/python getNeuroML.py
ENV ADDITIONAL_PATH="/neuron/nrn-7.4/x86_64/bin"
CMD export PATH=$PATH:$ADDITIONAL_PATH; /bin/echo -e "ADDITIONAL_PATH is $ADDITIONAL_PATH\nPATH is $PATH"
RUN echo $PATH
RUN echo $ADDITIONAL_PATH
#WORKDIR /home/docker/git
#RUN git clone
我用Dockerfile指定了镜像
$docker build .
我找到最新版本的IMAGE ID,并使用以下命令输入:
$docker run -it d10bd1b2c2bb /bin/bash
但是,当我输入docker镜像时,我发现环境变量PATH的内容为空。
最后的命令是:
ENV ADDITIONAL_PATH="/neuron/nrn-7.4/x86_64/bin"
CMD export PATH=$PATH:$ADDITIONAL_PATH; /bin/echo -e "ADDITIONAL_PATH is $ADDITIONAL_PATH\nPATH is $PATH"
RUN echo $PATH
RUN echo $ADDITIONAL_PATH
RUN
echo语句的输出是适当的。在构建镜像的过程中,docker环境变量看起来不错,但是,仅当我输入docker镜像时,才会出现问题。如果省略了这些最终的Docker命令,那么当我进入新创建的镜像时,
PATH
变量仍然是一个空字符串。我想知道是否有人知道出了什么问题?
感谢您的任何建议。
最佳答案
仅以下形式的语句:
ENV路径/ opt / conda / bin / conda:/ opt / conda / bin / python:$ PATH
应该用于设置环境变量。
然后可以使用以下命令检查path变量:
运行echo $ PATH
在构建期间,但是命令如
conda和python可能无法在构建过程中按预期运行,但是当您输入docker镜像时,PATH变量将正确更新。
关于docker - 输入新的Docker镜像时返回空PATH,我们在Stack Overflow上找到一个类似的问题: https://stackoverflow.com/questions/39627692/