java - MacOS 无法识别 MacOS 10.14.6 上更新的 Java

Question

在通过 Homebrew 将 R 更新到 3.6.1 后重新安装软件包的过程中，我遇到了这个问题(在 RStudio 1.2.5019 中运行):

install.packages( "rJava" )
...
...
...
configure: error: One or more Java configuration variables are not set.
Make sure R is configured with full Java support (including JDK). Run
R CMD javareconf
as root to add Java support to R.

If you don't have root privileges, run
R CMD javareconf -e
to set all Java-related variables and then install rJava.

ERROR: configuration failed for package ‘rJava’
* removing ‘/usr/local/lib/R/3.6/site-library/rJava’

正在运行

bash-3.2$ sudo R CMD javareconf

产量

Java interpreter : /usr/bin/java
Java version     : 1.8.0_25
Java home path   : /Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre
Java compiler    : /usr/bin/javac
Java headers gen.: /usr/bin/javah
Java archive tool: /usr/bin/jar

trying to compile and link a JNI program 
detected JNI cpp flags    : -I$(JAVA_HOME)/../include -I$(JAVA_HOME)/../include/darwin
detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm
clang -I"/usr/local/Cellar/r/3.6.1_1/lib/R/include" -DNDEBUG -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include/darwin  -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I/usr/local/include  -fPIC  -g -O2  -c conftest.c -o conftest.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/Cellar/r/3.6.1_1/lib/R/lib -L/usr/local/opt/gettext/lib -L/usr/local/opt/readline/lib -L/usr/local/lib -o conftest.so conftest.o -L/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/lib/server -ljvm -L/usr/local/Cellar/r/3.6.1_1/lib/R/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation


JAVA_HOME        : /Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre
Java library path: $(JAVA_HOME)/lib/server
JNI cpp flags    : -I$(JAVA_HOME)/../include -I$(JAVA_HOME)/../include/darwin
JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm
Updating Java configuration in /usr/local/Cellar/r/3.6.1_1/lib/R
Done.

重新运行 install.packages( "rJava") 会产生略有不同的错误消息:

*** JDK is incomplete! Please make sure you have a complete JDK. JRE is *not* sufficient.
configure: error: ./configure failed for jri
ERROR: configuration failed for package ‘rJava’
* removing ‘/usr/local/lib/R/3.6/site-library/rJava’
Warning in install.packages :
  installation of package ‘rJava’ had non-zero exit status

但我注意到 R CMD javareconf 的输出列出了旧的 Java 版本:1.8.0_25。运行 java -version 确认:

java version "1.8.0_25"
Java(TM) SE Runtime Environment (build 1.8.0_25-b17)
Java HotSpot(TM) 64-Bit Server VM (build 25.25-b02, mixed mode)

运行 /usr/libexec/java_home -V 确认仅安装了 1.8.0_25(即使在下载并运行最新 Java 版本的安装程序之后):

Matching Java Virtual Machines (1):
    1.8.0_25, x86_64:   "Java SE 8" /Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home

/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home

查看Java Control Panel显示据说已安装 1.8.0_231-b11。

我尝试卸载 Java 并重新安装 Java，但没有效果。

为什么会出现这样的差异？如何让他们的操作系统识别最新版本？

我正在运行 MacOS Mojave 10.14.6

谢谢

Answer 1

好的，新手错误。我安装的是 JRE 而不是 JDK。从Oracle下载JDK并安装解决了java版本问题。