R: install.package() 没有在 CentOS 6.5 上调用编译器

Question

R 版本:3.1.1

我要安装this package .我下载了源代码并将其放在我的主目录下。之后，我运行 install.packages("~/rEDM/",repos=NULL,type="source") 从源代码安装。我得到的错误信息是:

Installing package into ‘/d1/dwuab/R/x86_64-redhat-linux-gnu-library/3.1’
(as ‘lib’ is unspecified)
* installing *source* package ‘rEDM’ ...
** libs
I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/d1/dwuab/R/x86_64-redhat-linux-gnu-library/3.1/Rcpp/include"  -I../inst/include    -c RcppExports.cpp -o RcppExports.o
/bin/sh: I/usr/include/R: No such file or directory
make: [RcppExports.o] Error 127 (ignored)
I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/d1/dwuab/R/x86_64-redhat-linux-gnu-library/3.1/Rcpp/include"  -I../inst/include    -c block_lnlp.cpp -o block_lnlp.o
/bin/sh: I/usr/include/R: No such file or directory
make: [block_lnlp.o] Error 127 (ignored)
I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/d1/dwuab/R/x86_64-redhat-linux-gnu-library/3.1/Rcpp/include"  -I../inst/include    -c forecast_machine.cpp -o forecast_machine.o
/bin/sh: I/usr/include/R: No such file or directory
make: [forecast_machine.o] Error 127 (ignored)
I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/d1/dwuab/R/x86_64-redhat-linux-gnu-library/3.1/Rcpp/include"  -I../inst/include    -c lnlp.cpp -o lnlp.o
/bin/sh: I/usr/include/R: No such file or directory
make: [lnlp.o] Error 127 (ignored)
I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/d1/dwuab/R/x86_64-redhat-linux-gnu-library/3.1/Rcpp/include"  -I../inst/include    -c xmap.cpp -o xmap.o
/bin/sh: I/usr/include/R: No such file or directory
make: [xmap.o] Error 127 (ignored)
-L/usr/local/lib64 -o rEDM.so RcppExports.o block_lnlp.o forecast_machine.o lnlp.o xmap.o -L/usr/lib64/R/lib -lR
/bin/sh: line 2: -L/usr/local/lib64: No such file or directory
make: *** [rEDM.so] Error 127
ERROR: compilation failed for package ‘rEDM’
* removing ‘/d1/dwuab/R/x86_64-redhat-linux-gnu-library/3.1/rEDM’
Warning message:
In install.packages("~/rEDM/", repos = NULL, type = "source") :
  installation of package ‘/ghome/dwuab/rEDM/’ had non-zero exit status

这里有些不对劲，因为 R 根本没有调用编译器。 该软件包的作者说这是由于 R 和/或 GCC 配置错误造成的。

我的问题:有人知道问题出在哪里吗？或者如何解决问题？

编辑 1:使用命令 install.packages("./master.zip",repos=NULL,type="source") 通过 zip 文件安装包导致以下错误消息:

Installing package into ‘/d1/dwuab/R/x86_64-redhat-linux-gnu-library/3.1’
(as ‘lib’ is unspecified)
Error in rawToChar(block[seq_len(ns)]) : 
  embedded nul in string: 'PK\003\004\n\0\0\0\0\0\x83h,H\0\0\0\0\0\0\0\0\0\0\0\0\f\0\t\0rEDM-master/UT\005\0\001Fj\x95VPK\003\004\n\0\0\0\b\0\x83h,H\x8ewq\xa1\030\0\0\0\034\0\0\0\031\0\t\0rEDM-master/.Rbuild'
Warning message:
In install.packages("./master.zip", repos = NULL, type = "source") :
  installation of package ‘./master.zip’ had non-zero exit status

编辑 2:我在机器上没有 root 权限。

Answer 1

作为解决方法，我使用 EasyBuild 编译和安装 R 3.2.1 和 GCC 4.9.3。整个编译和安装过程花了我好几天的时间……现在可以了。